hsa_ribocircSCD_001
General information
riboCIRC ID
Spliced length (nt)
Genome position
Strand
Assembly
BSJ-spanning ORF
Host gene
Best transcript
CircRNA sequence
Supporting evidence for translation
Note: The features for m6A, IRES, RBP binding, and RNA editing may occur on linear as well as circular isoforms, making unambiguous assignment to circRNA-specific regulation difficult.
Ribosome profiling data
Dataset
Sample
Condition
Total BSJ-spanning footprints
Unique BSJ-spanning footprints
circORF and MS data
Note: In the absence of an in-frame stop codon within a circRNA, rolling-circle translation yields an infinite ORF, with length denoted as INF.
cicrORF ID
Start(Relative)
End(Relative)
Length(aa)
circORF ID
PXD Accession
Peptide hits
circORF-encoded peptide
m6A modification and IRES element
m6A sites
REPIC database
IRES/IRES-like sequences
IRESbase database
-
RBP binding and RNA editing
RNA editing sites
REDIportal database
RBP-binding cluster
RBP Name
Structural diagram of circRNA
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Designed circRNA primer sets
Note：The color scale ranges from dark blue, representing low Tm (or GC%) value, and passes through light blue, white, light red and finally to dark red, representing high Tm (or GC%) value.
General information
| riboCIRC ID | Spliced length (nt) | ||
|---|---|---|---|
| Genome position | Strand | ||
| Assembly | BSJ-spanning ORF | ||
| Host gene | Best transcript | ||
|
CircRNA sequence
|
|||
Supporting evidence for translation
Note: The features for m6A, IRES, RBP binding, and RNA editing may occur on linear as well as circular isoforms, making unambiguous assignment to circRNA-specific regulation difficult.
Ribosome profiling data
| Dataset | Sample | Condition | Total BSJ-spanning footprints | Unique BSJ-spanning footprints |
|---|
circORF and MS data
Note: In the absence of an in-frame stop codon within a circRNA, rolling-circle translation yields an infinite ORF, with length denoted as INF.
| cicrORF ID | Start(Relative) | End(Relative) | Length(aa) |
|---|
| circORF ID | PXD Accession | Peptide hits |
|---|
circORF-encoded peptide
m6A modification and IRES element
| m6A sites | REPIC database | |
|---|---|---|
| IRES/IRES-like sequences | IRESbase database | - |
RBP binding and RNA editing
| RNA editing sites | REDIportal database |
|---|
| RBP-binding cluster | RBP Name |
|---|
Structural diagram of circRNA
Designed circRNA primer sets
Note：The color scale ranges from dark blue, representing low Tm (or GC%) value, and passes through light blue, white, light red and finally to dark red, representing high Tm (or GC%) value.